Get variants that overlap between two datasets

Source: R/deprec_funcs.R

get_overlapping_snps_by_pos()

This method is deprecated and will be removed in future versions. use match_by_pos instead.

get_overlapping_snps_by_pos(df1, df2, verbose = F)

Arguments

df1

A dataframe of variants, has to contain CHROM and POS

df2

A dataframe of variants, has to contain CHROM and POS

verbose

A logical scalar (default: FALSE). Assign to TRUE to get information on which alleles are matched and which are not.

Value

The input dataframe containing only those variants whith matched alleles in the snpset

Examples

if (FALSE) {
get_overlapping_snps_by_pos(dat1, dat2)
}