match_by_pos()
match_by_pos(df1, df2, verbose = NULL, show_full_output = FALSE)A dataframe of variants, has to contain CHROM and POS
A dataframe of variants, has to contain CHROM and POS
A logical scalar (default: FALSE). Assign to TRUE to get information on which alleles are matched and which are not.
A logical scalar (default:FALSE). Assign to TRUE to show the full output from this function
A list containing two dataframes, one of overlapping snps and the other snps not found in the second input dataset
# \donttest{
CD_UKBB_index_snps <- get_lead_snps(CD_UKBB)
match_by_pos(CD_UKBB_index_snps, CD_FINNGEN)
#> $found
#> CHROM POS REF1 ALT1 P1 E1 REF2 ALT2 P2
#> 1 1 67216513 G A 8.03684e-20 -0.2517527 G A 1.04321e-08
#> 2 5 40439961 C T 7.42668e-11 0.1818381 C T 2.80350e-13
#> 3 16 50485831 A G 8.18444e-16 0.5591071 A G 8.06046e-08
#> 4 16 50729867 G GC 7.36933e-24 0.7618894 G GC 1.49882e-09
#> E2 ID
#> 1 -0.146556 rs11576518
#> 2 0.187984 rs7713270
#> 3 0.426680 rs76176364
#> 4 0.530875 rs2066847
#>
#> $not_found
#> CHROM POS REF1 ALT1 P1 E1 ID_tmp
#> 1 2 233237298 A C 1.70216e-09 0.1628839 2_233237298
#> 2 6 31660620 T A 1.47082e-24 0.8893100 6_31660620
#> 3 6 32708532 A C 1.27821e-15 0.5884587 6_32708532
#> 4 7 50274703 T G 8.52335e-14 0.2077781 7_50274703
#> 5 9 4984530 G C 5.03745e-11 -0.1833112 9_4984530
#>
# }